WISARD[wɪzərd]
Workbench for Integrated Superfast Association study with Related Data
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Troubleshooting

Why Do We Meet Errors? [top]

There are hundreds of reasons that WISARD does not proceed anymore. In this case, WISARD halts execution and reports error message that might be helpful to solve the problem that made WISARD halt.

Below provides the list of error messages in WISARD and some suggestions to fix the reason of halt message.

Meaning of Error Messages [top]

Error messages can start with SYSERR or not. Error message starting with SYSERR indicates that error is attributable to the interal reason of WISARD, such as programming error, unhandled data structure, or exceptions. Error messages without SYSERR indicates that error results from invalid assignment of given dataset/option/specification/value (s). Below explains where the inconsistency is orginated from.

All errors must be fixed to run WISARD and if you need any helps for your error, please contact maintainer, biznok@gmail.com.

for the detailed information about possible parameters."
Error message Meaning
CANT_EXCL_OPT There are options that cannot be used simultaneously. For example, --remvariant and --selvariant cannot be used at the same time because meaning of --remvariant is to exclude specified variants, but --selvariant has exactly opposite meaning. In this case, the meaning of options is unclear and WISARD returns this error message.

▶ See the solution
FAIL_LAUNCH_R Fail to launch R with WISARD. This error can be generated with multiple reasons.

▶ See the solution
DUPL_SNPINGENESET There are mroe-than-one variants with same identifier in a single gene set definition

▶ See the solution
FAIL_OPEN_URLWITHDESC Opening HTTP stream fails with some description about the purpose of the stream

▶ See the solution
FAIL_OPEN_URL Opening HTTP stream fails without any description about the purpose of the stream

▶ See the solution
FAIL_OPEN_FILEWITHDESC Opening file fails with same identifier in a single gene set definition

▶ See the solution
FAIL_OPEN_FILE Opening file fails without any description

▶ See the solution
FAIL_OPEN_GZWITHDESC Opening file is successful but the initialization fails because of two reasons: (1) Input file is a gzipped archive. (2) Since the current version of WISARD does not support the retrieval of gzipped archive. This error describes what the purpose of this file is.

▶ See the solution
FAIL_OPEN_GZ Opening gzipped file fails because the current version of WISARD does not support the retrieval of gzipped archive, without any description about the file.

▶ See the solution
FAIL_AUTOOPEN_TFAMEXTMISS The input file is assigned with --tped but opening TFAM file fails because the file does not have extension.

▶ See the solution
FAIL_AUTOOPEN_TFAMNOTEXIST The input file is assigned with --tped but the corresponding TFAM file is not found on the directory.

▶ See the solution
CANT_ONEALLELE_MISSING For some individuals' genotypes, only an allele is found and the other is missing.

▶ See the solution
CANT_DO_W_SOMEOPT Cannot perform function specified by options because meaning of some options is in conflict with other options

▶ See the solution
CANT_DO_WO_SOMEOPT Cannot perform some functionality because of there are some essential option(s) missed required to that functionality.

▶ See the solution
CANT_OPT_W_OTHEROPT Cannot execute WISARD because meaning of some options are in conflict with each other.

▶ See the solution
CANT_OPT_W_SOMESTATE Cannot execute WISARD, because some options are not suitable for the current analysis. In general, this error occurs if the specified options are useless for analysis.

▶ See the solution
FAIL_INIT_WINSOCK Fail to initialize WinSock library of Microsoft Windows. Note that this error uniquely happens on Windows.

▶ See the solution
FAIL_INIT_LOG Fail to open the file [prefix].log to log in.

▶ See the solution
FAIL_READ_BEDSIG Even though PLINK binary PED file is assigned as an input, the signature of PLINK binary PED file is not found in the assigned file path

▶ See the solution
FAIL_MEMALLOC_W_SYSMSG WISARD fails to get a sufficient memory since the operating system cannot provide memory with specified size. Note that the error message provides information about the size of requested memory and the name of procedure, and other information that comes from your operating system.

▶ See the solution
FAIL_MEMALLOC WISARD fails to get a sufficient memory since the operating system cannot provide memory with specified size. The error message provides the information only about the size of requested memory and the name of procedure.

▶ See the solution
NULL_GENEDEF All genes are filtered out after filtering and inclusion step, and analyses are not performed for any genes.

▶ See the solution
NULL_SAMPLE All samples are filtered out after filtering and inclusion step, and analyses are not performed for any genes.

▶ See the solution
NULL_OPTVALUE Some options always require argument, but arguments for those options are not provided in the command line.

▶ See the solution
INVL_FILE_INCMPL The input file have incomplete data in specified line number.

▶ See the solution
WISARD_INVL_OPTVAL_GENERAL_INT
WISARD_INVL_OPTVAL_GENERAL_STR
The value of specified option is not valid. It means that (1) Given value is out of range or (2) Given value contains incorrect or invalid value

▶ See the solution


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Last modified : 2014-06-30 17:19:27