WISARD[wɪzərd] Workbench for Integrated Superfast Association study with Related Data |
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There are hundreds of reasons that WISARD does not proceed anymore.
In this case, WISARD halts execution and reports error message
that might be helpful to solve the problem that made WISARD halt.
Below provides the list of error messages in WISARD and some suggestions to fix the reason of halt message.
Error messages can start with SYSERR or not. Error message starting with SYSERR
indicates that error is attributable to the interal reason of WISARD, such as programming error,
unhandled data structure, or exceptions.
Error messages without SYSERR indicates that error results from invalid assignment of given
dataset/option/specification/value (s). Below explains where the inconsistency is orginated from.
All errors must be fixed to run WISARD and if you need any helps for your error,
please contact maintainer, biznok@gmail.com.
Error message | Meaning | |
CANT_EXCL_OPT | There are options that cannot be used simultaneously.
For example, --remvariant and --selvariant cannot be used at the same time because meaning of --remvariant is to exclude
specified variants, but --selvariant has exactly opposite meaning. In this case, the meaning of options is unclear
and WISARD returns this error message. ▶ See the solution |
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FAIL_LAUNCH_R | Fail to launch R with WISARD. This error can be generated with multiple reasons. ▶ See the solution |
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DUPL_SNPINGENESET | There are mroe-than-one variants with same identifier in a single gene set definition ▶ See the solution |
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FAIL_OPEN_URLWITHDESC | Opening HTTP stream fails with some description about the purpose of the stream ▶ See the solution |
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FAIL_OPEN_URL | Opening HTTP stream fails without any description about the purpose of the stream ▶ See the solution |
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FAIL_OPEN_FILEWITHDESC | Opening file fails with same identifier in a single gene set definition ▶ See the solution |
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FAIL_OPEN_FILE | Opening file fails without any description ▶ See the solution |
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FAIL_OPEN_GZWITHDESC | Opening file is successful but the initialization fails because of two reasons:
(1) Input file is a gzipped archive.
(2) Since the current version of WISARD does not support the retrieval of gzipped archive. This error describes what the purpose of this file is. ▶ See the solution |
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FAIL_OPEN_GZ | Opening gzipped file fails because the current version of WISARD does not support the retrieval of gzipped archive, without any
description about the file. ▶ See the solution |
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FAIL_AUTOOPEN_TFAMEXTMISS | The input file is assigned with --tped but opening TFAM file fails because the file does not have extension. ▶ See the solution |
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FAIL_AUTOOPEN_TFAMNOTEXIST | The input file is assigned with --tped but the corresponding TFAM file is not found on the directory. ▶ See the solution |
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CANT_ONEALLELE_MISSING | For some individuals' genotypes, only an allele is found and the other is missing. ▶ See the solution |
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CANT_DO_W_SOMEOPT | Cannot perform function specified by options because meaning of some options is in conflict with other options ▶ See the solution |
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CANT_DO_WO_SOMEOPT | Cannot perform some functionality because of there are some essential option(s) missed required to that functionality. ▶ See the solution |
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CANT_OPT_W_OTHEROPT | Cannot execute WISARD because meaning of some options are in conflict with each other. ▶ See the solution |
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CANT_OPT_W_SOMESTATE | Cannot execute WISARD, because some options are not suitable for the current analysis.
In general, this error occurs if the specified options are useless for analysis. ▶ See the solution |
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FAIL_INIT_WINSOCK | Fail to initialize WinSock library of Microsoft Windows. Note that this error uniquely happens on Windows. ▶ See the solution |
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FAIL_INIT_LOG | Fail to open the file [prefix].log to log in. ▶ See the solution |
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FAIL_READ_BEDSIG | Even though PLINK binary PED file is assigned as an input, the signature of PLINK binary PED file is not found in the assigned file path ▶ See the solution |
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FAIL_MEMALLOC_W_SYSMSG | WISARD fails to get a sufficient memory since the operating system cannot provide memory with specified size. Note that the error message provides information about the size of
requested memory and the name of procedure, and other information that comes from your operating system. ▶ See the solution |
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FAIL_MEMALLOC | WISARD fails to get a sufficient memory since the operating system cannot provide memory with specified size. The error message provides the information only about the size of
requested memory and the name of procedure. ▶ See the solution |
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NULL_GENEDEF | All genes are filtered out after filtering and inclusion step, and analyses are not performed for any genes. ▶ See the solution |
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NULL_SAMPLE | All samples are filtered out after filtering and inclusion step, and analyses are not performed for any genes. ▶ See the solution |
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NULL_OPTVALUE | Some options always require argument, but arguments for those options are not provided in the command line. ▶ See the solution |
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INVL_FILE_INCMPL | The input file have incomplete data in specified line number. ▶ See the solution |
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WISARD_INVL_OPTVAL_GENERAL_INT WISARD_INVL_OPTVAL_GENERAL_STR |
The value of specified option is not valid. It means that (1) Given value is out of range or (2) Given value contains incorrect or invalid value ▶ See the solution |