LPEseq: Local-pooled-error test for RNA Sequencing experiments with a small number of replicates
– Version: Release (0.01)
– Written in R script (R-2.15)
– No package dependencyEstimate gene-specific variance specially when no replicate RNA-Seq data is available and test for differential expression based on local pooled error.
Author:
Jungsoo Gim <jgim80@snu.ac.kr>
Sungho Won <won1@snu.ac.kr>
Taesung Park <tspark@stats.snu.ac.kr>
Maintainer: Jungsoo Gim <jgim80@snu.ac.kr>
Any comments will be welcome.
To install this package, start R and enter:
> source(“http://bibs.snu.ac.kr/software/LPEseq/LPEseq.R”)
> install.packages(“LPEseq_version.tar.gz”, repos=NULL, type=”source”))
Documentation
LPEseq manuscript LPEseq manuscript including detailed methods
LPEseq supplementary LPEseq online supplementary
source manual Description of functions included in “LPEseq” package
usage manual Exercise with an example script
Download
LPEseq R package-the lastest version
Citation:
Jungsoo Gim, Sungho Won, Taesung Park, (2016) PLoS ONE