- LPEseq -

LPEseq: Local-pooled-error test for RNA Sequencing experiments with a small number of replicates


- Version: Release (0.01)
- Written in R script (R-2.15)
- No package dependency

Estimate gene-specific variance specially when no replicate RNA-Seq data is available and test for differential expression based on local pooled error.

Author:
Jungsoo Gim <jgim80@snu.ac.kr>
Sungho Won <won1@snu.ac.kr>
Taesung Park <tspark@stats.snu.ac.kr>

Maintainer: Jungsoo Gim <jgim80@snu.ac.kr>
Any comments will be welcome.

To install this package, start R and enter:

     > source("http://bibs.snu.ac.kr/software/LPEseq/LPEseq.R")
     > install.packages("LPEseq_version.tar.gz", repos=NULL, type="source"))


Documentation

LPEseq manuscript    LPEseq manuscript including detailed methods
LPEseq supplementary    LPEseq online supplementary
source manual    Description of functions included in "LPEseq" package
usage manual    Exercise with an example script



Download

LPEseq R package-the lastest version


Citation:

  • Jungsoo Gim, Sungho Won, Taesung Park, (2016) PLoS ONE
  • Developed by BIBS Lab., Seoul National University, Korea