2020

  1. Jiang N, Lee S, Park T (2020) HisCoM-PCA:  Hierarchical structural Component Model for Pathway analysis of Common vAriants. BMC medical genomics, 13(Suppl 3), 26
  2. Kang JS, Higuchi R, He J, Yamamoto M, Wolfgang CL, Cameron JL, Han Y, Son D, Lee S, Choi YJ, Byun Y, Kim H, Kwon W, Kim S-W, Park T, Jang J-Y (2020) Proposal of the Minimal Number of Retrieved Regional Lymph Nodes for Accurate Staging of Distal Bile Duct Cancer and Clinical Validation of the Three-tier Lymph Node Staging System (AJCC 8th edition). Journal of Hepato-Biliary-Pancreatic Sciences, 27:75–83
  3. Kwon W, Park T, He J, Higuchi R, Son D, Lee SY5, Kim J, Byun Y, Kim H, Kim SW, Wolfgang CL, Yamamoto M, Jang JY (2020) Is the New T1 Category as Defined in the Eighth Edition of the AJCC Pancreatic Cancer Staging System an Improvement?. J Gastrointest Surg, 24(2), 262-269
  4. Jiang N, Lee S, Park T (2020) HisCoM-PCA: software for hierarchical structural component analysis for pathway analysis based using principal component analysis. Genomics & Informatics, 18(1), e:11
  5. Ahn E, Ouma C, Loha M, Dibaba A, Dyment W, Kim J, Beck NS, Park T (2020) Do we need to reconsider the CMAM admission and discharge criteria?; an analysis of CMAM data in South Sudan. BMC Public Health, 20(1):511
  6. Kim SI, Kang N, Leem S, Yang J, Jo H, Lee M, Kim HS, Dhanasekaran DN, Kim Y-K, Park T, Song YS (2020) Metagenomic Analysis of Serum Microbe-Derived Extracellular Vesicles and Diagnostic Models to Differentiate Ovarian Cancer and Benign Ovarian Tumor. Cancers, 12(5), 1309
  7. Park M, Lee JW, Park T, Lee S (2020) Gene-Gene Interaction Analysis for the Survival Phenotype Based on the Kaplan-Meier Median Estimate. Biomed Research International, doi.org/10.1155/2020/5282345
  8. Leem S, Huh I, Park T (2020) Enhanced Permutation Tests via Multiple Pruning. Frontiers in Genetics,  doi.org/10.3389/fgene.2020.00509
  9. Huh I, Choi S, Kim Y, Park S-Y, Kwon O, Park T (2020) Two-stage clustering analysis to detect pattern change of biomarker expression between experimental conditions. International Journal of Data Mining and Bioinformatics, 23(4), 299-317
  10. Joshi P, Jeong S, Park T (2020) Sparse superlayered neural network-based multi-omics cancer subtype classification. International Journal of Data Mining and Bioinformatics, 24(1), 58~73
  11. Hwangbo S, Kim SI, Cho U, Suh D-S, Song Y-S, Park T (2020) Systematic investigation of hyperparameters on performance of deep neural networks: application to ovarian cancer phenotypes. International Journal of Data Mining and Bioinformatics, 24(1), 1~15
  12. Choi S, Lee S, Huh I, Hwang H, Park T (2020) HisCoM-G×E: Hierarchical Structural Component Analysis of Gene-Based Gene–Environment Interactions. International Journal of Molecular Sciences, 21(18):6724
  13. Kim B, Cho EJ, Yoon J-H, Kim SS, Cheong JY, Cho SW, Park T (2020) Pathway-Based Integrative Analysis of Metabolome and Microbiome Data from Hepatocellular Carcinoma and Liver Cirrhosis Patients. Cancers, 12(9), 2705
  14. Lee H-S, Park T (2020) The influences of DNA methylation and epigenetic clocks, on metabolic disease, in middle-aged Koreans. Clinical Epigenetics, 12:148
  15. Park M, Lee JW, Park T, Lee SY (2020) Gene-Gene Interaction Analysis for the Survival Phenotype Based on the Kaplan-Meier Median Estimate. BioMed Research International, doi: 10.1155/2020/5282345
  16. Hwangbo S, Kim S, Cho U, Suh D-S, Song U-S, Park T (2020) Systematic investigation of hyperparameters on performance of deep neural networks: application to ovarian cancer phenotypes. International Journal of Data Mining and  Bioinformatics, 24(1), 1~15
  17. Kim SA, Kang N , Park T (2020) Hierarchical structured Component Analysis for Microbiome Data Using Taxonomy Assignments. IEEE/ACM  Transactions on  Computational Biology and Bioinformatics, doi: 10.1109/TCBB.2020.3039326
  18. Kim SI, Kang N, Leem S, Yang J, Jo H, Lee M, Kim HS, Dhanasekaran DN, Kim Y-K, Park T, Song Y-S (2020) Metagenomic Analysis of Serum Microbe-Derived Extracellular Vesicles and Diagnostic Models to Differentiate Ovarian Cancer and Benign Ovarian Tumor. Cansers, 12(5), 1309
  19. Kang JS, Lee C, Song W, Choo W, Lee S, Lee S, Han Y, Bassi C, Salvia R, Marchegiani G, Wolfgang CL, He J, Blair AB, Kluger MD, Su GH, Kim SC, Song KB, Yamamoto M, Higuchi R, Hatori T, Yang CY, Yamaue H, Hirono S, Satoi S, Fujii T, Hirano S, Lou W, Hashimoto Y, Shimizu Y, Del Chiaro M, Valente R, Lohr M, Choi DW, Choi SH, Heo JS, Motoi F, Matsumoto I, Lee WJ, Kang CM, Shyr YM, Wang SE, Han HS, Yoon YS, Besselink MG, van Huijgevoort NCM, Sho M, Nagano H, Kim SG, Honda G, Yang Y, Yu HC, Do Yang J, Chung JC, Nagakawa Y, Seo HI, Choi YJ, Byun Y, Kim H, Kwon W, Park T, Jang JY (2020) Risk prediction for malignant intraductal papillary mucinous neoplasm of the pancreas : logistic regression vs. machine learning. Scientific Reports, 10(1), 20140
  20. Ahn E, Ouma C, Loha M, Dibaba A, Dyment W, Kim J, Beck NS & Park T (2020) Do we need to reconsider the CMAM admission and discharge criteria An analysis of CMAM data in South Sudan. BMC Public Health, 50:511
  21. Choi S, Lee S, Huh I, Hwang H, Park T (2020) HisCoM-G×E: Hierarchical Structural Component Analysis of Gene-Based Gene-Environment Interaction. International Journal Of Molecular Sciences, 21(18), 6724
  22.  Jiang N, Lee S, Park T (2020) HisCoM-PCA software for hierarchical structural component analysis for pathway analysis based using principal component analysis. Genomics & Informatics, 18(1), e11
  23. Park M, Kim D, Moon K, Park T (2020) Integrative Analysis of Multi-Omics Data Based on Blockwise Sparse Principal Components. International Journal of Molecular Sciences, 21(21), 8202
  24. Kim B, Cho EJ, Yoon J-H, Kim SS, Cheong JY, Cho SW, Park T (2020) Pathway Based Integrative Analysis of Metabolome and Microbiome Data from Hepatocellular Carcinoma and Liver Cirrhosis Patients. Cancers, 21(9), 2705
  25. Joshi P, Jeong S, Park T (2020) Sparse superlayered neural network based multi-omics cancer subtype classification. International Journal of Data Mining and  Bioinformatics, 24(1), 58~73
  26. Hwangbo S, Kim SI, Cho U, Suh D-S, Song Y-S, Park T (2020) Systematic investigation of hyperparameters on performance of deep neural networks application to ovarian cancer phenotypes. International Journal of Data Mining and  Bioinformatics, 24(1), 1-15
  27. Park S, Jung HW, Lee JM, Shin B, Kim HJ, Kim M-H, Song W-J,, Kwon H-S, Jung J-W, Kim S-H, Park H-W, Jang A-S, Chang Y-S, Cho US, Cho S-H, Choi BW, Won S, Park T, Moon H-B, Kin C, Kim T-B, COREA investigators (2020) Novel Trajectories for Identifying Asthma Phenotypes: A Longitudinal Study in Korean Asthma Cohort, COREA. The Journal of Allergy and Clinical Immunology, 7(6), 1850-1857
  28. Lee W-J, Lim JE, Jung HU, Kang J-O, Park T, Won S, Rhee, SY, Kim MK, Kim Y-J, Oh B (2020) Analysis of the Interaction between Polygenic Risk Score and Calorie Intake in Obesity in the Korean Population. Lifestyle Genomics, 14(1), 20-29
  29. Park B, An J, Kim W, Kang HY, Koh SB, Oh B, Jung KJ, Jee SH, Kim WJ, Cho MH, Silverman EK, Park T, Won S (2020) Effect of 6p21 region on lung function is modified by smoking: a genome-wide interaction study. Scientific Reports, 10(1), 13075
  30. Apio C, Kamruzzaman M, Park T (2020) Confidence intervals for the COVID-19 neutralizing antibody retention rate in the Korean population. Genomics & Informatics, 18(4), e31
  31. Apio C, Kamruzzaman M, Park T (2020) Updated confidence intervals for the COVID-19 antibody retention rate in the Korean population. Genomics & Informatics, 18(4), e45
  32. Kim SA, Cho EJ, Lee S, Cho YY, Kim B, Yoon J-W, Park T (2020) Changes in serum fibronectin levels predict tumor recurrence in patients with early hepatocellular carcinoma after curative treatment. Scientific Reports, 10(1), 21313