GWAS-GMDR web version 1.2

- Example data file

• Covariates and phenotype file : covphe.txt


• SNP size 10, Sample size 5000 : marker_10.txt


• SNP size 100, Sample size 5000 : marker_100.txt


• SNP size 1000, Sample size 5000 : marker_1k.txt

Option
combination order :	>
cross validation count :	>
method to make threshold for testing :	Top K (CV) Top K (No CV)
measure for snp selection :	Balanced Accuracy Accuracy Homogeneity Test Stat Gamma Stat tau_b tau_c somers_d1 somers_d2 nmi lr
missing method :	None Missing Category Complete Available
tie :	High Low Ignore
number of final significant snp combinations for presentation (top k) :
shuffling :	not shuffling shuffling
Traits type :	binary traits continuous traits
covariates and phenotype file :	(Default file is 'covphe.txt'.)
marker file :	(Default file is 'marker_10.txt'.)